Positive
A Positive result is indicated by the organism or gene being highlighted in yellow.
When our species-specific primer sets are designed, the expected size of the amplification product (in base pairs)
is known. As every patient sample, every positive control, and every negative control are run in duplicate, when a sample
produces an amplification product of the expected size on either, or both, of the assay runs, it is scored as a ‘positive’.
Non-Predicted Size (NPS)
A NPS result is indicated by the organism or gene being highlighted in yellow, followed by NPS.
When we see an aberrantly sized amplification product, we consider the following: These microbial genomes are
small, on the order of a million bp, and tend to reproduce quickly. If a mutation occurs within the genome, something
non-deleterious to the organism, the mutation will then be perpetuated in subsequent generations. If this mutation occurs
in our target amplification region, the size of the subsequent amplification product will change (small or larger). The
product size differential could possibly be due to mutation, degraded DNA, mutation of species, unspecified subspecies,
etc. We have found that the NPS are more commonly detected in individuals with long-term infections. To be scored as
an NPS, the product needs to be visualized on both runs of the sample. It is at the discretion of a qualified medical
provider to interpret NPS results.
Indeterminate (IND)
An Indeterminate result is indicated by the organism or gene being highlighted in yellow, followed by IND.
An Indeterminant result indicates that an amplification product was produced for a particular organism on the
panel. However, the amplification product was not the expected size and was only present on one test run of the sample.
The explanation for this is the same as the NPS, however the aberrant amplification product was only present on one test
run. It is at the discretion of a qualified medical provider to interpret IND results.
Interpretation of Results